brett71, hi
When you lift the flooring, first thing to do is to check for wood rot in the joist ends [the ends of the joists that are embedded in the wall]
Any wood rot, then replace the joist a Bathroom is a small space so replacing joists could be fairly "easy"
If there is no wood rot then, consider using a "firing piece" this is a very long, up to several meters in length, thin triangular piece of timber the same [or nearly] the thickness of the joist and cut to the thickness needed to get the offending joist back to level.
It is possible with a bit of "MUCKING ABOUT" to fix a series of "diminishing packers" along the length of the joist to adjust the top surface of the joists to match each other. The use of ply of various thicknesses, hardboard in several or only one layer.
The "firing piece" option is preferred, the exact dimensions of each "firing piece is dependant on the top levels that you are confronted with when you strip off the present flooring.
If you do not have the tools to create a "firing piece" then a local decent joiners shop should be able to produce what you need
Would also suggest that you spend some effort and apply a spray of a wood preservative to all timber, Bathrooms are notorious for wood rot?
Hope this gives some ideas on how to proceed?
Ken