Did you undo the bleed nut on the caliper when you were pushing the piston in? because you probably would of had to to get them in and it might of let a bit of air into the system and it probably needs bleeding if that's the case.
I'm not sure, how did you manage to get them in without the nut open? I have just done disks/pads on a citroen xantia and i couldn't get them in enough without the nut open. I did break a brake caliper tho but thats another story :d
A right puzzler to be sure....you can press the pistons back in with or without undoing the bleed nipple, and reversing the seals in the master cylinder doesn't really happen. However, with the help of a pal, undo one of the outlets on the master cylinder and get him to press the pedal to the floor and hold it there while you tighten up again, then try it with the other pipe - but don't run out of fluid! See if the pedal works ok. If it does I wonder if you've huffed the ABS but can't see how.