Is the burner a downfiring unit? If so, then if there is a slight leak in the supply pipework, the pump may be pulling in air and eventually running dry, causing it to seize. A poor oil supply can also affect a forward facing burner, and it can take quite a few minutes for a blockage to manifest itself as a fuel shortage. A new drive dog is supplied with every pump and should be replaced. Misalignment can cause your problems, and overtightening the holding screws in the motor flange can cause this. Very often only two screws are used which can easily misalign the pump. A check for this is to rotate the pump with the fan whilst it is mounted in the burner. At the end of the day, a new burner can be bought for about £300 which should solve your problems if they are totally burner related, but I feel yours are not.